Language

RSS feeds

Bibliography

Julie Bourbeillon's bibliography

Added journal_article: Semantic search among heterogeneous biological databases based on gene ontology.

2010-07-20 09:16:17

Edited journal_article: Report

2009-08-20 10:03:33

Edited journal_article: Database resources of the National Center for Biotechnology Information.

2009-07-29 09:46:37

Edited proceedings_article: Consistent Evolution of OWL Ontologies

2009-07-29 09:18:32

Edited proceedings_article: Consistency Checking of Semantic Web Ontologies

2009-07-29 09:09:25

LegacyWorlds Beta 6

Updates on the new version's design and progress

Milestone 2 – Ground combat

TSeeker / Thu, 12 Aug 2010 08:09:45 +0000

Milestone 2 – Space combat

TSeeker / Tue, 03 Aug 2010 11:56:02 +0000

Milestone 2 – Battle system

TSeeker / Thu, 29 Jul 2010 21:20:11 +0000

Milestone 2 – Weapons and defences

TSeeker / Tue, 27 Jul 2010 17:21:17 +0000

Beta 6 Milestone 1 – Tips

TSeeker / Mon, 19 Jul 2010 18:57:28 +0000

History

16th February 2010 Update of the publications list and links list. Improvement of the lay-out of the CV.

15th February 2010 Update of my new status. Finally!

22nd of May 2009 Updated to PySSE 0.2.5. Clean up and reorganisation of the site.

16th of May 2009 Updated to PySSE 0.2.3.

14th of May 2009 Updated to PySSE 0.2.1 and added breadcrumbs.

(view complete history)

My CV, which is detailed below, is also available in PDF format.

Download:

pdf

Skills

Scientific skills

Knowledge engineering
Ontologies, Knowledge bases, knowledge exploitation, Semantic Web.
Information systems
Information Retrieval, User Adaptation, Information Visalisation.
Large datasets
Management and exploitation of large heterogeneous datasets.
Biomedical applications
Clinical, medical imaging, anathomopathology, molecular biology.

Bioinformatics skills

Data banks
Knowledge of reference public databanks, contribution to the development of the molecular interactions IntAct database.
Tools
Modelisation of biological processes, exploitation of large biomedical datasets.

Computer sciences skills

Languages
C, C++, JAVA, PHP, SQL, HTML, XML, scripts shell (KSH, BASH), RDF, OWL, SPARQL, SWRL.
Databases
Oracle, MySQL, PostgreSQL, Access.
Operating systems
Windows 2000, Windows XP, Windows 7, Solaris, HP-UX, GNU/Linux.

Languages

French
Mother tongue.
English
Fluent, daily professional use.
German
Basic.

Research experiences

2009-...	Assistant Professor	Agrocampus Ouest - Angers Centre
2009-...	Topic	Exploitation of large datasets
2008-2009	ATER	Bordeaux 2 University
	Topic	Ontologies and Web Services for ProteomeBinders
	Supervisor	David J. Sherman
2007-2008	Post-doc	INRIA Bordeaux - Sud-Ouest, MAGNOME Team
	Topic	Ontologies and Web Services for ProteomeBinders
	Supervisor	David J. Sherman
2004-2007	PhD	LIG, MRIM Team - TIMC-IMAG, RFMQ Team
	Topic	Towards task-oriented information synthesis - Application to Tissue MicroArrays design and evaluation
	Supervisor	Catherine Garbay - Françoise Giroud
2003-2004	Master	TIMC-IMAG, RFMQ and SIC Teams
	Topic	An hybrid system to assist with Tissue MicroArrays design
	Supervisor	Catherine Garbay - Françoise Giroud
Supervision	2009	One Computer Sciences Master 2 student
	2007	One Computer Sciences bachelor degree student, two Computer Sciences Master 2 students
	2006	One Computer Sciences Master 1 student

Teaching experiences

2009-...	Assistant Professor	Agrocampus Ouest - Angers Centre
	Departement	Economics, Data Management and Communication
	Courses	Information Technology, office tools, programming, databases
2008-2009	ATER	Bordeaux 2 University
	Department	Life Sciences
	Courses	Introduction to IT, ontologies, bioinformatics, linear algebra, basic statistics, differential calculus
2005-2007	Supply teacher	Grenoble 1 University
	Department	Computer sciences and applied mathematics
	Courses	Introduction to IT
Tutoring	2009	Two Bioinformatics Master 2 students during their training period

Professional experiences

2002	Engineer	LOGICA
	Department	Technical Support
	Activites	Maintenance on an international logistics software for a client company
2000-2002	Training Engineer	IBM Global Services
	Department	Finance
	Activities	Evaluation / test of an accounting management system (5 months) - Project management (6 months) - Development of an interface to manage users' maintenance requests (4 months)

Education

2004-2007	PhD	Grenoble 1 University
	Speciality	Sciences and Engineering for Healthcare and Medicine
	Topic	Towards task-oriented information synthesis - Application to Tissue MicroArrays design and evaluation
2003-2004	Master	Grenoble 1 University
	Speciality	Sciences and Engineering for Healthcare and Medicine
	Topic	An hybrid system to assist with Tissue MicroArrays design
1998-2002	Master	Institut National Agronomique Paris-Grignon
	Title	INA P-G Engineer
	Speciality	Computer Sciences
1996-1998	Preparatory school	Lycée Claude Fauriel, Saint-Étienne
1996-1998	Class	Biology, Chemistry, Physics, Geology (BCPST)
1996	Bac S	Lycée Albert Camus, Firminy
	Speciality	Biology and geology (SVT)
	Mention:	Very good